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SRX9138082: AVENIO Expanded on human cfDNA: male Hispanic normal, replicate 1
1 ILLUMINA (NextSeq 500) run: 36.3M spots, 6.6G bases, 1.3Gb downloads

Design: DNA was prepared into libraries using the Roche AVENIO expanded kit according to manufacturer's recommendations. Library was sequenced on Illumina NextSeq 500 and analyzed on the AVENIO Oncology Analysis Server. Deduped bam used for SNV and INDEL calls. Sorted bam used for CNV and fusion calls.
Submitted by: ResearchDx
Study: AVENIO ctDNA Analytical performance
show Abstracthide Abstract
Circulating tumor (ct)DNA assays performed in clinical laboratories provide tumor biomarker testing support for biopharmaceutical clinical trials. Yet it is neither practical nor economically feasible for many of these clinical laboratories to internally develop their own liquid biopsy assay. Commercially available ctDNA kits are a potential solution for laboratories seeking to incorporate liquid biopsy into their test menus. However, the scarcity of characterized patient samples and cost of purchasing validation reference standards creates a barrier to entry. In the current study, we evaluated the analytical performance of the AVENIO ctDNA liquid biopsy platform (Roche Sequencing Solutions) for use in our clinical laboratory.
Sample:
SAMN16183339 • SRS7379886 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: LS8833058D_Expanded_1
Instrument: NextSeq 500
Strategy: Targeted-Capture
Source: SYNTHETIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 36.3M spots, 6.6G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR1265693336,319,1546.6G1.3Gb2020-09-16

ID:
11900893

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